This is far from comprehensive, but it'll have to do:
MMVThe Hunter, by Danzig (Call Me Snake)
Hey You, by Pink Floyd (Coppola 72-79)
2+2=5, by Radiohead (The Selected Works of Johnnie To)
Hell Bent for Leather, by Judas Priest (They Died as They Tried)
Looking for the Magic, by The Dwight Twilley Band (Movie Magic, vol 1)
Storm Coming, by Gnarls Barkley (Killer Bob)
Shining Violence, by Chromatics (The Last Days of Laura Palmer)
The Day the World Went Away, by Nine Inch Nails (Judy)
Deliver Me, by Sarah Brightman (Passion-Love)
Somebody to Love, by Queen (Somebody to [Punch Drunk] Love)
My Name is Mud, by Primus (Tucker & Dale)
New Born, by Muse (The Host)
Imagine, by A Perfect Circle (Vengeance: A Trilogy)
Baby Did a Bad Bad Thing, by Chris Isaak (Baby Did a Real Bad Thing)
No World for Tomorrow, by Coheed and Cambria (No World for Tomorrow)
Violet Hill by Coldplay (The Chicago Way)
Fljotavik, by Sigur Ros (Come and be Friendly)
WrestlingStone Cold Crazy, by Queen (Time Bomb)
Nobody but Me, by The Human Beinz (Mascara Metalik)
This Boy, by Franz Ferdinand (YeaOh!)
The Great Gig in the Sky, by Pink Floyd (A Perfect MV)
The Dolphin's Cry, by Live (Aut Vincere Aut Mori)
Just A Thought, by Gnarls Barkley (Just A Thought)
Would Be Killer, by Gnarls Barkley (187)
Cosmonaut by At the Drive-In (Mysterio vs Malenko)
Call Me, by Blondie (Ric Flair: American Gigolo)
Immigrant Song, by Led Zeppelin (Madness)
Broken Bones, by Nonpoint (CZW 2007)
Don't Sweat the Technique, by Eric B & Rakim (The 2 Cold Technique)
Theme (for Ennio Morricone), by Murder by Death (The Deadman Rides Again)
Rumbrave, by Murder by Death (The Deadman Rides Again)
Apocalypse Please, by Muse (The Pro Wrestling Apocalypse)
Butterflies and Hurricanes, by Muse (Thunder)
Exogenesis: Symphony Part 1: Overture, by Muse (The Genesis of the Great Muta)